Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: NTFQ01001907.1 Kokia drynarioides strain JFW-HI SEQ_113698, whole genome shotgun sequence

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000

Length: 2765
ACGTcount: A:0.36, C:0.12, G:0.17, T:0.35


Found at i:595 original size:21 final size:21

Alignment explanation


    Indices: 533--582  Score: 72
    Period size: 17  Copynumber: 2.6  Consensus size: 21

        523 TGGGAAGGTT

                                 
        533 CTACCGATACAAGTATGAC-A
          1 CTACCGATACAAGTATGACTA

                                 
        553 CT---GATACAAGTATGACTA
          1 CTACCGATACAAGTATGACTA

                        
        571 CTACCGATACAA
          1 CTACCGATACAA

        583 TTATTACTTC


Statistics
Matches: 26,  Mismatches: 0, Indels: 7
        0.79            0.00        0.21

Matches are distributed among these distances:
  17   14  0.54
  18    3  0.12
  20    2  0.08
  21    7  0.27

ACGTcount: A:0.40, C:0.24, G:0.14, T:0.22


Consensus pattern (21 bp):   
CTACCGATACAAGTATGACTA
Done.