Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: NTFQ01000191.1 Kokia drynarioides strain JFW-HI SEQ_110874, whole genome shotgun sequence

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 972

Length: 1620
ACGTcount: A:0.31, C:0.22, G:0.20, T:0.28


Found at i:266 original size:14 final size:16

Alignment explanation


    Indices: 240--271  Score: 50
    Period size: 15  Copynumber: 2.1  Consensus size: 16

        230 GGCTGTAAAT

                            
        240 TCGGAGTGTACTC-CA
          1 TCGGAGTGTACTCGCA

                            
        255 TCGGAG-GTACTCGCA
          1 TCGGAGTGTACTCGCA

              
        270 TC
          1 TC

        272 ATTCGGTTGT


Statistics
Matches: 16,  Mismatches: 0, Indels: 2
        0.89            0.00        0.11

Matches are distributed among these distances:
  14    6  0.38
  15   10  0.62

ACGTcount: A:0.19, C:0.28, G:0.28, T:0.25


Consensus pattern (16 bp):   
TCGGAGTGTACTCGCA
Done.