Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: NTFQ01001911.1 Kokia drynarioides strain JFW-HI SEQ_113704, whole genome shotgun sequence

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000

Length: 2588
ACGTcount: A:0.33, C:0.22, G:0.13, T:0.32


Found at i:1165 original size:20 final size:20

Alignment explanation


    Indices: 1121--1169  Score: 66
    Period size: 19  Copynumber: 2.5  Consensus size: 20

       1111 CTATAATTAA

                  *             
       1121 ACATTAAATT-TATAAAAAT
          1 ACATTATATTATATAAAAAT

                          *     
       1140 AC-TTATATTATATGAAAAT
          1 ACATTATATTATATAAAAAT

                       
       1159 ACATTATATTA
          1 ACATTATATTA

       1170 AATCATAATG


Statistics
Matches: 26,  Mismatches: 2, Indels: 3
        0.84            0.06        0.10

Matches are distributed among these distances:
  18    6  0.23
  19   12  0.46
  20    8  0.31

ACGTcount: A:0.51, C:0.06, G:0.02, T:0.41


Consensus pattern (20 bp):   
ACATTATATTATATAAAAAT
Done.