genome.fa.s1912.2.7.7.80.10.50.1000.1.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: NTFQ01001912.1 Kokia drynarioides strain JFW-HI SEQ_113705, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  17952

Tables:   1   

This is table  1  of  1  ( 32 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
638--692	26	2.1	26	93	6	94	36	10	10	41	1.75
3720--3905	97	1.9	97	84	6	252	37	15	17	30	1.91
4222--4362	28	4.8	31	71	16	104	33	6	26	34	1.82
4370--4543	59	3.0	59	81	7	194	41	3	23	31	1.71
4150--4448	117	2.6	116	77	10	306	35	6	24	33	1.81
4238--4584	29	11.9	29	70	13	144	37	5	23	33	1.78
4404--4584	59	3.1	58	80	6	150	42	5	21	30	1.75
4405--4585	88	2.1	89	81	8	210	41	5	21	30	1.76
5458--5500	22	1.9	23	90	4	70	55	0	4	39	1.20
5464--5562	17	5.9	17	75	3	94	54	6	3	36	1.41
5462--5565	6	18.5	6	72	13	60	51	5	2	39	1.41
6006--6124	39	3.2	36	73	18	107	25	16	30	27	1.97
6006--6203	78	2.6	77	82	0	243	25	18	29	26	1.98
6468--6650	98	1.9	98	83	2	242	22	24	14	38	1.92
6540--7174	49	12.8	48	71	15	300	17	25	17	39	1.92
6539--7226	147	4.6	146	81	6	742	17	24	17	39	1.91
6661--7176	49	10.5	49	75	9	410	17	25	17	39	1.91
6802--7226	98	4.3	98	74	9	373	17	24	17	40	1.90
13372--13464	30	3.1	29	72	17	91	35	8	24	31	1.86
13356--13569	57	3.7	56	77	13	193	35	7	22	34	1.83
13320--13794	58	8.1	58	73	14	243	37	6	23	33	1.80
13552--13791	85	2.8	87	79	10	240	38	4	24	32	1.76
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
13344--13760	29	14.4	30	67	20	133	37	5	24	32	1.80
13553--13775	114	1.9	114	82	6	272	39	4	23	33	1.74
13736--13797	30	2.0	32	84	6	83	32	1	24	41	1.64
14907--14957	22	2.5	20	78	12	57	33	11	0	54	1.37
15612--15650	11	3.5	11	82	0	51	53	0	0	46	1.00
15614--15712	17	5.9	17	71	3	85	52	6	4	37	1.45
15612--15715	6	18.5	6	69	13	51	50	5	3	40	1.45
15626--15714	34	2.7	33	82	1	106	52	6	4	35	1.48
15661--15713	16	3.2	16	81	5	70	50	1	7	39	1.41
16840--16884	16	2.8	16	79	0	54	48	4	4	42	1.43

Tables:   1

The End!