Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: NTFQ01001918.1 Kokia drynarioides strain JFW-HI SEQ_113717, whole genome shotgun sequence

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 771

Length: 1285
ACGTcount: A:0.34, C:0.12, G:0.23, T:0.31


Found at i:1129 original size:4 final size:4

Alignment explanation


    Indices: 1120--1205  Score: 77
    Period size: 4  Copynumber: 21.2  Consensus size: 4

       1110 AAATAAACGG

                                                *       *     *          
       1120 GAAA GAAA GAAA GGAAA GAAA GAAA GAAA AAAA GAAG GAGAG GAAA GAAA
          1 GAAA GAAA GAAA -GAAA GAAA GAAA GAAA GAAA GAAA GA-AA GAAA GAAA

                    *     *                   *            
       1170 G-AA GAAG GAGAG GAAA GAAA GAAA -AAG GAAA GAAA G
          1 GAAA GAAA GA-AA GAAA GAAA GAAA GAAA GAAA GAAA G

       1206 GTAATGTATT


Statistics
Matches: 69,  Mismatches: 8, Indels: 10
        0.79            0.09        0.11

Matches are distributed among these distances:
   3    5  0.07
   4   52  0.75
   5   12  0.17

ACGTcount: A:0.67, C:0.00, G:0.33, T:0.00


Consensus pattern (4 bp):   
GAAA

Found at i:1176 original size:20 final size:20

Alignment explanation


    Indices: 1119--1198  Score: 90
    Period size: 20  Copynumber: 3.9  Consensus size: 20

       1109 CAAATAAACG

                             *    
       1119 GGAAAGAAAGAAAGGAAAGA-A
          1 GGAAAGAAAG-AA-GAAGGAGA

            *         *          
       1140 AGAAAGAAAAAAAGAAGGAGA
          1 GGAAAG-AAAGAAGAAGGAGA

                                
       1161 GGAAAGAAAGAAGAAGGAGA
          1 GGAAAGAAAGAAGAAGGAGA

                        *     
       1181 GGAAAGAAAGAAAAAGGA
          1 GGAAAGAAAGAAGAAGGA

       1199 AAGAAAGGTA


Statistics
Matches: 51,  Mismatches: 6, Indels: 5
        0.82            0.10        0.08

Matches are distributed among these distances:
  20   35  0.69
  21   13  0.25
  22    3  0.06

ACGTcount: A:0.66, C:0.00, G:0.34, T:0.00


Consensus pattern (20 bp):   
GGAAAGAAAGAAGAAGGAGA
Done.