Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: NTFQ01001926.1 Kokia drynarioides strain JFW-HI SEQ_113726, whole genome shotgun sequence

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000

Length: 1689
ACGTcount: A:0.31, C:0.13, G:0.21, T:0.35


Found at i:230 original size:15 final size:15

Alignment explanation


    Indices: 210--240  Score: 62
    Period size: 15  Copynumber: 2.1  Consensus size: 15

        200 GAAAAAGTAG

                           
        210 TAGCAATTGTTCGAA
          1 TAGCAATTGTTCGAA

                           
        225 TAGCAATTGTTCGAA
          1 TAGCAATTGTTCGAA

             
        240 T
          1 T

        241 TTGAGTCAAG


Statistics
Matches: 16,  Mismatches: 0, Indels: 0
        1.00            0.00        0.00

Matches are distributed among these distances:
  15   16  1.00

ACGTcount: A:0.32, C:0.13, G:0.19, T:0.35


Consensus pattern (15 bp):   
TAGCAATTGTTCGAA
Done.