Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: NTFQ01001934.1 Kokia drynarioides strain JFW-HI SEQ_113744, whole genome shotgun sequence

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 601

Length: 1003
ACGTcount: A:0.34, C:0.15, G:0.11, T:0.39


Found at i:947 original size:21 final size:20

Alignment explanation


    Indices: 920--981  Score: 56
    Period size: 21  Copynumber: 3.0  Consensus size: 20

        910 GGCTAAGTTG

                                 
        920 TAAAAATGAATTAAGCTCAAT
          1 TAAAAAT-AATTAAGCTCAAT

             *         *         
        941 TTAAAAT-ATTGAG-TACAAT
          1 TAAAAATAATTAAGCT-CAAT

                            *    
        960 TAAAAATTAATTAAGCCCAAT
          1 TAAAAA-TAATTAAGCTCAAT

             
        981 T
          1 T

        982 GAGAAGTAAG


Statistics
Matches: 32,  Mismatches: 5, Indels: 8
        0.71            0.11        0.18

Matches are distributed among these distances:
  18    1  0.03
  19   14  0.44
  20    1  0.03
  21   16  0.50

ACGTcount: A:0.50, C:0.10, G:0.08, T:0.32


Consensus pattern (20 bp):   
TAAAAATAATTAAGCTCAAT
Done.