Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: NTFQ01001939.1 Kokia drynarioides strain JFW-HI SEQ_113758, whole genome shotgun sequence

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000

Length: 10486
ACGTcount: A:0.35, C:0.14, G:0.15, T:0.36


Found at i:2240 original size:11 final size:11

Alignment explanation


    Indices: 2226--2250  Score: 50
    Period size: 11  Copynumber: 2.3  Consensus size: 11

       2216 ATTTGCTTTT

                       
       2226 TATTTATTATA
          1 TATTTATTATA

                       
       2237 TATTTATTATA
          1 TATTTATTATA

               
       2248 TAT
          1 TAT

       2251 ATATATATTG


Statistics
Matches: 14,  Mismatches: 0, Indels: 0
        1.00            0.00        0.00

Matches are distributed among these distances:
  11   14  1.00

ACGTcount: A:0.36, C:0.00, G:0.00, T:0.64


Consensus pattern (11 bp):   
TATTTATTATA

Found at i:2244 original size:15 final size:17

Alignment explanation


    Indices: 2224--2256  Score: 52
    Period size: 17  Copynumber: 2.1  Consensus size: 17

       2214 TGATTTGCTT

                             
       2224 TTTATT-TAT-TATATA
          1 TTTATTATATATATATA

                             
       2239 TTTATTATATATATATA
          1 TTTATTATATATATATA

             
       2256 T
          1 T

       2257 ATTGAATGCA


Statistics
Matches: 16,  Mismatches: 0, Indels: 2
        0.89            0.00        0.11

Matches are distributed among these distances:
  15    6  0.38
  16    3  0.19
  17    7  0.44

ACGTcount: A:0.36, C:0.00, G:0.00, T:0.64


Consensus pattern (17 bp):   
TTTATTATATATATATA

Found at i:2908 original size:17 final size:18

Alignment explanation


    Indices: 2886--2919  Score: 61
    Period size: 17  Copynumber: 1.9  Consensus size: 18

       2876 TATATTTTAG

                              
       2886 ACATTTAAA-TTTAAAAT
          1 ACATTTAAATTTTAAAAT

                             
       2903 ACATTTAAATTTTAAAA
          1 ACATTTAAATTTTAAAA

       2920 ATTTATTTGT


Statistics
Matches: 16,  Mismatches: 0, Indels: 1
        0.94            0.00        0.06

Matches are distributed among these distances:
  17    9  0.56
  18    7  0.44

ACGTcount: A:0.53, C:0.06, G:0.00, T:0.41


Consensus pattern (18 bp):   
ACATTTAAATTTTAAAAT
Done.