Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: NTFQ01001947.1 Kokia drynarioides strain JFW-HI SEQ_113770, whole genome shotgun sequence

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000

Length: 3504
ACGTcount: A:0.32, C:0.14, G:0.17, T:0.37


Found at i:2484 original size:29 final size:30

Alignment explanation


    Indices: 2448--2506  Score: 102
    Period size: 29  Copynumber: 2.0  Consensus size: 30

       2438 CATGAATTAA

                                          
       2448 TGTGTAATTATATATATG-AATTTTGATTT
          1 TGTGTAATTATATATATGAAATTTTGATTT

                     *                    
       2477 TGTGTAATTTTATATATGAAATTTTGATTT
          1 TGTGTAATTATATATATGAAATTTTGATTT

       2507 GATTCAAATT


Statistics
Matches: 28,  Mismatches: 1, Indels: 1
        0.93            0.03        0.03

Matches are distributed among these distances:
  29   17  0.61
  30   11  0.39

ACGTcount: A:0.31, C:0.00, G:0.14, T:0.56


Consensus pattern (30 bp):   
TGTGTAATTATATATATGAAATTTTGATTT

Done.