Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: NTFQ01001949.1 Kokia drynarioides strain JFW-HI SEQ_113772, whole genome shotgun sequence

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000

Length: 4807
ACGTcount: A:0.34, C:0.17, G:0.16, T:0.33


Found at i:151 original size:55 final size:54

Alignment explanation


    Indices: 41--156  Score: 162
    Period size: 54  Copynumber: 2.1  Consensus size: 54

         31 AAAAAAAATA

                                 *  *                             
         41 TTTTTTGGGTGATGGTCAAGTTATGGCCATCACTCTCTTTATCAGATAAATTTT
          1 TTTTTTGGGTGATGGTCAAGTCATAGCCATCACTCTCTTTATCAGATAAATTTT

                  *         *                       *               
         95 TTTTTTTGGTGATGGTTAAGTCATAGCCATCACT-TCTTTTTCAGATTAAAATTTT
          1 TTTTTTGGGTGATGGTCAAGTCATAGCCATCACTCTCTTTATCAGA-T-AAATTTT

                   
        150 TTTTTTG
          1 TTTTTTG

        157 ATACTTGCCA


Statistics
Matches: 54,  Mismatches: 6, Indels: 3
        0.86            0.10        0.05

Matches are distributed among these distances:
  53   10  0.19
  54   31  0.57
  55   13  0.24

ACGTcount: A:0.22, C:0.13, G:0.16, T:0.49


Consensus pattern (54 bp):   
TTTTTTGGGTGATGGTCAAGTCATAGCCATCACTCTCTTTATCAGATAAATTTT
Done.