Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: NTFQ01001957.1 Kokia drynarioides strain JFW-HI SEQ_113781, whole genome shotgun sequence

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 739

Length: 1232
ACGTcount: A:0.34, C:0.16, G:0.19, T:0.31


Found at i:134 original size:11 final size:12

Alignment explanation


    Indices: 105--136  Score: 55
    Period size: 12  Copynumber: 2.7  Consensus size: 12

         95 AACTTTAATT

                        
        105 TTTTAAATTTTA
          1 TTTTAAATTTTA

                        
        117 TTTTAAATTTTA
          1 TTTTAAATTTTA

               *    
        129 TTTAAAAT
          1 TTTTAAAT

        137 GTAATCACAC


Statistics
Matches: 19,  Mismatches: 1, Indels: 0
        0.95            0.05        0.00

Matches are distributed among these distances:
  12   19  1.00

ACGTcount: A:0.38, C:0.00, G:0.00, T:0.62


Consensus pattern (12 bp):   
TTTTAAATTTTA
Done.