Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: NTFQ01001961.1 Kokia drynarioides strain JFW-HI SEQ_113789, whole genome shotgun sequence

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000

Length: 3828
ACGTcount: A:0.32, C:0.14, G:0.19, T:0.36

Warning! 1 characters in sequence are not A, C, G, or T


Found at i:2992 original size:105 final size:104

Alignment explanation


    Indices: 2818--3052  Score: 242
    Period size: 105  Copynumber: 2.2  Consensus size: 104

       2808 AGCACAATAC

                              *    *             *     * *    **             
       2818 TGAGCCTGATGTTGTCACTTATAATATATTGGTTGATGCGTATTGTAAGGCTGGGATCATTTCTA
          1 TGAGCCTGATGTTGTCACGTATAGTATATTGGTTGATACGTATGGCAAGGAGGGGATCATTTCTA

                    *     *     *                 *  
       2883 AAGCTGTAGACACTGTTGACGCAATGAGAAA-TCAAGATAT
         66 AAGCTGTAAACACTATTGACACAATGAGAAACTC-AG-CAT

                   *                               *                         
       2923 TGAGCCTAATGTTGTCACGTATAGTATATTGGTTGATACTTATGGCAAGGAGGGGA-CGATTT-T
          1 TGAGCCTGATGTTGTCACGTATAGTATATTGGTTGATACGTATGGCAAGGAGGGGATC-ATTTCT

             *          *        *                    
       2986 CCAAGCTGTAAATACTATTGATACAATGAGAAAGCTCAGCAT
         65 -AAAGCTGTAAACACTATTGACACAATGAGAAA-CTCAGCAT

               *           *         
       3028 TGAACCTGATGTTGTTACGTATAGT
          1 TGAGCCTGATGTTGTCACGTATAGT

       3053 GCGTTAATAA


Statistics
Matches: 107,  Mismatches: 19, Indels: 8
        0.80            0.14        0.06

Matches are distributed among these distances:
 104    2  0.02
 105  101  0.94
 106    2  0.02
 107    2  0.02

ACGTcount: A:0.30, C:0.14, G:0.24, T:0.33


Consensus pattern (104 bp):   
TGAGCCTGATGTTGTCACGTATAGTATATTGGTTGATACGTATGGCAAGGAGGGGATCATTTCTA
AAGCTGTAAACACTATTGACACAATGAGAAACTCAGCAT
Done.