Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: NTFQ01001963.1 Kokia drynarioides strain JFW-HI SEQ_113800, whole genome shotgun sequence

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000

Length: 4214
ACGTcount: A:0.33, C:0.14, G:0.16, T:0.37


Found at i:387 original size:19 final size:20

Alignment explanation


    Indices: 338--378  Score: 59
    Period size: 20  Copynumber: 2.1  Consensus size: 20

        328 TGTTTTAAAG

                         *      
        338 TTTATAG-T-TTAGTTTTAT
          1 TTTATAGTTATTATTTTTAT

                                
        356 TTTATAGTTATTATTTTTAT
          1 TTTATAGTTATTATTTTTAT

               
        376 TTT
          1 TTT

        379 TATCTATTAA


Statistics
Matches: 20,  Mismatches: 1, Indels: 2
        0.87            0.04        0.09

Matches are distributed among these distances:
  18    7  0.35
  19    1  0.05
  20   12  0.60

ACGTcount: A:0.22, C:0.00, G:0.07, T:0.71


Consensus pattern (20 bp):   
TTTATAGTTATTATTTTTAT
Done.