Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: NTFQ01001965.1 Kokia drynarioides strain JFW-HI SEQ_113802, whole genome shotgun sequence

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000

Length: 7694
ACGTcount: A:0.32, C:0.18, G:0.18, T:0.31


Found at i:1590 original size:36 final size:36

Alignment explanation


    Indices: 1542--1635  Score: 172
    Period size: 36  Copynumber: 2.6  Consensus size: 36

       1532 ATTTTGCAAG

                 *                              
       1542 TTAGGACC-ATTTTCAATTGCAACACCAAGAATGAA
          1 TTAGGCCCAATTTTCAATTGCAACACCAAGAATGAA

                                                
       1577 TTAGGCCCAATTTTCAATTGCAACACCAAGAATGAA
          1 TTAGGCCCAATTTTCAATTGCAACACCAAGAATGAA

                                   
       1613 TTAGGCCCAATTTTCAATTGCAA
          1 TTAGGCCCAATTTTCAATTGCAA

       1636 ATAGGTAATA


Statistics
Matches: 57,  Mismatches: 1, Indels: 1
        0.97            0.02        0.02

Matches are distributed among these distances:
  35    7  0.12
  36   50  0.88

ACGTcount: A:0.37, C:0.21, G:0.14, T:0.28


Consensus pattern (36 bp):   
TTAGGCCCAATTTTCAATTGCAACACCAAGAATGAA
Done.