Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: NTFQ01000197.1 Kokia drynarioides strain JFW-HI SEQ_110884, whole genome shotgun sequence

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 610

Length: 1017
ACGTcount: A:0.34, C:0.19, G:0.21, T:0.26


Found at i:312 original size:9 final size:9

Alignment explanation


    Indices: 298--323  Score: 52
    Period size: 9  Copynumber: 2.9  Consensus size: 9

        288 CTATACTAAG

                     
        298 AAATGTCAC
          1 AAATGTCAC

                     
        307 AAATGTCAC
          1 AAATGTCAC

                    
        316 AAATGTCA
          1 AAATGTCA

        324 GATTTATGGA


Statistics
Matches: 17,  Mismatches: 0, Indels: 0
        1.00            0.00        0.00

Matches are distributed among these distances:
   9   17  1.00

ACGTcount: A:0.46, C:0.19, G:0.12, T:0.23


Consensus pattern (9 bp):   
AAATGTCAC
Done.