Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: NTFQ01001978.1 Kokia drynarioides strain JFW-HI SEQ_113824, whole genome shotgun sequence

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000

Length: 3302
ACGTcount: A:0.32, C:0.17, G:0.17, T:0.34


Found at i:1203 original size:25 final size:24

Alignment explanation


    Indices: 1158--1205  Score: 69
    Period size: 25  Copynumber: 2.0  Consensus size: 24

       1148 CAAATGTAAT

                         *  *       
       1158 TTTATTATTTTAATAGTTTAAATC
          1 TTTATTATTTTAAAAGGTTAAATC

                                    
       1182 TTTATTATTTTTAAAAGGTTAAAT
          1 TTTATTA-TTTTAAAAGGTTAAAT

       1206 TAAATTTTTA


Statistics
Matches: 21,  Mismatches: 2, Indels: 1
        0.88            0.08        0.04

Matches are distributed among these distances:
  24    7  0.33
  25   14  0.67

ACGTcount: A:0.35, C:0.02, G:0.06, T:0.56


Consensus pattern (24 bp):   
TTTATTATTTTAAAAGGTTAAATC
Done.