Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: NTFQ01001979.1 Kokia drynarioides strain JFW-HI SEQ_113825, whole genome shotgun sequence

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000

Length: 2131
ACGTcount: A:0.39, C:0.12, G:0.13, T:0.36


Found at i:816 original size:32 final size:32

Alignment explanation


    Indices: 780--848  Score: 129
    Period size: 32  Copynumber: 2.2  Consensus size: 32

        770 TTTTTTTATT

                                            
        780 ATACTGTTGTGATTATATGATAATATATTTTC
          1 ATACTGTTGTGATTATATGATAATATATTTTC

                                  *         
        812 ATACTGTTGTGATTATATGATAGTATATTTTC
          1 ATACTGTTGTGATTATATGATAATATATTTTC

                 
        844 ATACT
          1 ATACT

        849 TTCTTAATTC


Statistics
Matches: 36,  Mismatches: 1, Indels: 0
        0.97            0.03        0.00

Matches are distributed among these distances:
  32   36  1.00

ACGTcount: A:0.30, C:0.07, G:0.13, T:0.49


Consensus pattern (32 bp):   
ATACTGTTGTGATTATATGATAATATATTTTC
Done.