Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: NTFQ01000198.1 Kokia drynarioides strain JFW-HI SEQ_110886, whole genome shotgun sequence

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000

Length: 3977
ACGTcount: A:0.32, C:0.18, G:0.16, T:0.34


Found at i:1385 original size:29 final size:29

Alignment explanation


    Indices: 1353--1419  Score: 73
    Period size: 29  Copynumber: 2.3  Consensus size: 29

       1343 TTTCTTAAAT

                       * *                
       1353 TTTAATCTTTTTATTCTATTTT-CTATTTA
          1 TTTAATCTTTTAAATC-ATTTTACTATTTA

                   *              * *    
       1382 TTTAATCCTTTAAATCATTTTATTTTTTA
          1 TTTAATCTTTTAAATCATTTTACTATTTA

                     
       1411 TTTAATCTT
          1 TTTAATCTT

       1420 GGTATTTGAT


Statistics
Matches: 31,  Mismatches: 6, Indels: 2
        0.79            0.15        0.05

Matches are distributed among these distances:
  28    5  0.16
  29   26  0.84

ACGTcount: A:0.24, C:0.10, G:0.00, T:0.66


Consensus pattern (29 bp):   
TTTAATCTTTTAAATCATTTTACTATTTA
Done.