Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: NTFQ01000199.1 Kokia drynarioides strain JFW-HI SEQ_110888, whole genome shotgun sequence

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000

Length: 3327
ACGTcount: A:0.40, C:0.12, G:0.12, T:0.36


Found at i:2135 original size:24 final size:24

Alignment explanation


    Indices: 2082--2138  Score: 69
    Period size: 24  Copynumber: 2.4  Consensus size: 24

       2072 TAAACTAATA

                   *   *        *   
       2082 AAAATTTGACTTAAACAAATTAAC
          1 AAAATTTAACTGAAACAAATAAAC

             *                     *
       2106 AGAATTTAACTGAAACAAATAAAT
          1 AAAATTTAACTGAAACAAATAAAC

                     
       2130 AAAATTTAA
          1 AAAATTTAA

       2139 TTAAAAAATT


Statistics
Matches: 27,  Mismatches: 6, Indels: 0
        0.82            0.18        0.00

Matches are distributed among these distances:
  24   27  1.00

ACGTcount: A:0.58, C:0.09, G:0.05, T:0.28


Consensus pattern (24 bp):   
AAAATTTAACTGAAACAAATAAAC
Done.