Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: NTFQ01001996.1 Kokia drynarioides strain JFW-HI SEQ_113853, whole genome shotgun sequence

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000

Length: 6330
ACGTcount: A:0.39, C:0.15, G:0.13, T:0.34


Found at i:2840 original size:24 final size:24

Alignment explanation


    Indices: 2813--2863  Score: 93
    Period size: 24  Copynumber: 2.1  Consensus size: 24

       2803 TAATATTTGA

                  *                 
       2813 AATTGAGTTCTATCTTAAAAATGC
          1 AATTGAATTCTATCTTAAAAATGC

                                    
       2837 AATTGAATTCTATCTTAAAAATGC
          1 AATTGAATTCTATCTTAAAAATGC

               
       2861 AAT
          1 AAT

       2864 GTGTCTTACC


Statistics
Matches: 26,  Mismatches: 1, Indels: 0
        0.96            0.04        0.00

Matches are distributed among these distances:
  24   26  1.00

ACGTcount: A:0.41, C:0.12, G:0.10, T:0.37


Consensus pattern (24 bp):   
AATTGAATTCTATCTTAAAAATGC
Done.