Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: NTFQ01001997.1 Kokia drynarioides strain JFW-HI SEQ_113854, whole genome shotgun sequence

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000

Length: 6336
ACGTcount: A:0.39, C:0.15, G:0.13, T:0.34

Warning! 2 characters in sequence are not A, C, G, or T


Found at i:728 original size:6 final size:6

Alignment explanation


    Indices: 717--743  Score: 54
    Period size: 6  Copynumber: 4.5  Consensus size: 6

        707 TCAACATAAA

                                           
        717 AGCTTC AGCTTC AGCTTC AGCTTC AGC
          1 AGCTTC AGCTTC AGCTTC AGCTTC AGC

        744 ATCAATAGAA


Statistics
Matches: 21,  Mismatches: 0, Indels: 0
        1.00            0.00        0.00

Matches are distributed among these distances:
   6   21  1.00

ACGTcount: A:0.19, C:0.33, G:0.19, T:0.30


Consensus pattern (6 bp):   
AGCTTC

Found at i:2846 original size:24 final size:24

Alignment explanation


    Indices: 2819--2869  Score: 93
    Period size: 24  Copynumber: 2.1  Consensus size: 24

       2809 TAATATTTGA

                  *                 
       2819 AATTGAGTTCTATCTTAAAAATGC
          1 AATTGAATTCTATCTTAAAAATGC

                                    
       2843 AATTGAATTCTATCTTAAAAATGC
          1 AATTGAATTCTATCTTAAAAATGC

               
       2867 AAT
          1 AAT

       2870 GTGTCTTACC


Statistics
Matches: 26,  Mismatches: 1, Indels: 0
        0.96            0.04        0.00

Matches are distributed among these distances:
  24   26  1.00

ACGTcount: A:0.41, C:0.12, G:0.10, T:0.37


Consensus pattern (24 bp):   
AATTGAATTCTATCTTAAAAATGC
Done.