genome.fa.s1998.2.7.7.80.10.50.1000.1.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: NTFQ01001998.1 Kokia drynarioides strain JFW-HI SEQ_113857, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  40285

Tables:   1   

This is table  1  of  1  ( 25 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
4105--4255	80	1.9	80	87	0	221	29	13	22	35	1.92
4697--4883	48	3.9	47	88	3	209	53	12	9	24	1.68
4709--4894	96	1.9	95	83	6	241	53	13	9	23	1.68
5755--6110	79	4.5	79	87	1	534	21	21	25	31	1.98
6953--6986	12	2.8	12	100	0	68	41	26	26	5	1.78
12591--13044	79	5.7	79	81	5	454	22	18	25	33	1.97
12591--13044	158	2.9	158	82	3	502	22	18	25	33	1.97
13909--13992	19	4.4	19	71	14	57	29	5	2	61	1.32
14138--14305	90	1.9	90	84	2	230	33	11	18	36	1.87
16248--16279	11	2.9	11	100	0	64	62	0	37	0	0.95
16663--16781	29	4.1	29	78	13	104	34	26	5	33	1.80
16663--16773	30	3.8	28	80	10	107	36	27	6	30	1.82
22805--22904	33	3.0	33	88	2	112	29	19	23	29	1.98
22825--22906	33	2.5	33	93	0	137	29	19	19	31	1.96
26664--26761	33	3.0	33	79	5	99	28	19	21	30	1.97
27288--27364	22	3.3	22	67	22	66	40	11	6	41	1.67
27285--27393	49	2.2	49	98	0	209	40	11	7	40	1.70
28313--28467	49	3.1	49	66	4	132	24	9	9	56	1.60
28311--28529	99	2.2	100	91	1	350	21	9	8	60	1.54
33067--33112	25	1.9	25	86	8	69	34	4	6	54	1.46
34170--34212	20	2.2	20	88	8	63	23	2	0	74	0.93
34165--34205	14	3.1	14	82	10	50	19	2	0	78	0.87
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
39765--39816	27	1.9	27	92	7	88	25	3	0	71	1.03
39764--39816	5	9.8	5	84	11	61	24	3	0	71	1.02
39767--39819	17	3.2	17	84	10	74	26	3	0	69	1.05

Tables:   1

The End!