genome.fa.s2.2.7.7.80.10.50.1000.1.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: NTFQ01000002.1 Kokia drynarioides strain JFW-HI SEQ_130364, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  318400

Tables:   1   

This is table  1  of  1  ( 105 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
25--61	18	2.1	18	89	0	56	24	27	0	48	1.51
4763--4800	19	2.0	20	94	5	69	28	10	15	44	1.80
4763--4806	17	2.4	18	88	11	63	29	11	13	45	1.79
10078--10262	40	4.6	40	85	4	239	21	20	31	27	1.97
10078--10263	80	2.3	80	89	0	291	21	19	31	27	1.98
15470--15552	26	3.2	26	85	0	121	27	21	18	32	1.96
22092--22189	26	3.7	26	88	1	133	27	28	16	27	1.97
26987--27058	26	2.8	26	81	8	92	26	20	23	29	1.99
28108--28175	17	3.9	18	77	9	61	47	11	19	22	1.81
34690--34746	21	2.7	21	73	10	53	14	14	28	43	1.83
37012--37086	26	2.9	26	70	7	62	33	22	16	28	1.95
41792--41867	26	2.9	26	88	0	116	27	26	22	23	1.99
44048--44077	13	2.3	13	94	0	51	16	0	0	83	0.65
47322--47372	16	3.1	16	76	15	50	15	5	0	78	0.93
47434--47563	20	6.6	19	69	21	72	16	6	4	72	1.22
47425--47473	26	1.9	25	87	4	71	14	6	2	77	1.05
47435--47478	15	2.9	15	83	13	54	15	4	0	79	0.89
50458--50517	22	2.7	23	82	10	70	40	1	3	55	1.27
50491--50537	25	1.9	25	91	4	78	40	0	8	51	1.33
51141--51239	40	2.5	42	77	11	100	34	2	1	62	1.13
51462--51647	89	2.1	88	83	7	223	37	19	6	36	1.78
51756--51792	16	2.2	16	90	4	56	72	2	0	24	0.97
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
51753--51830	24	3.1	25	78	15	81	66	1	2	29	1.13
51781--51848	19	3.7	18	79	14	52	64	1	4	29	1.21
51806--51886	10	8.2	10	73	10	51	61	2	3	32	1.26
51812--51851	21	1.9	21	85	10	55	60	2	5	32	1.32
52215--52293	20	4.0	21	68	12	60	32	2	0	64	1.07
52192--52252	27	2.3	26	72	16	61	37	1	0	60	1.07
52223--52271	18	2.6	19	78	12	57	34	2	0	63	1.06
52223--52272	19	2.7	17	77	17	55	34	2	0	64	1.05
52349--52487	66	2.1	64	83	10	167	41	5	14	38	1.70
52370--52494	64	1.9	65	82	10	159	42	5	14	37	1.69
56876--56915	19	2.1	19	100	0	80	37	10	10	42	1.72
87523--87547	2	12.5	2	100	0	50	52	48	0	0	1.00
92857--92910	28	1.9	28	96	0	99	44	24	14	16	1.85
93286--93331	23	2.0	23	100	0	92	21	8	34	34	1.84
101025--101063	21	1.9	21	89	5	62	12	12	7	66	1.43
103958--104015	31	1.9	30	83	16	75	77	0	18	3	0.91
103964--104012	24	2.0	26	84	15	68	77	0	18	4	0.92
105721--105759	18	2.1	19	85	4	53	7	10	5	76	1.13
109042--109125	34	2.5	34	80	0	96	20	13	30	35	1.90
115769--115806	17	2.2	17	90	0	58	55	15	10	18	1.68
119225--119271	24	2.0	24	87	4	69	53	8	10	27	1.64
120656--120689	15	2.3	15	89	0	50	41	0	8	50	1.34
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
124142--124496	32	11.1	32	82	2	374	29	20	16	32	1.95
136963--137441	32	15.0	32	77	5	310	31	18	15	34	1.93
136963--137464	64	7.9	64	78	4	381	31	18	15	34	1.93
137188--137361	93	1.9	93	86	0	249	31	20	14	33	1.93
137076--137388	125	2.5	127	80	3	355	31	18	15	34	1.92
137351--137455	33	3.2	33	81	4	115	33	19	15	32	1.92
137368--137475	33	3.3	34	80	5	123	32	18	14	34	1.91
143359--143404	24	1.9	24	82	8	58	45	17	10	26	1.81
144039--144081	12	3.6	12	80	0	50	0	37	0	62	0.95
170395--170437	21	2.0	22	86	4	61	32	11	11	44	1.77
171087--171552	23	20.7	23	82	3	536	34	6	13	45	1.70
171085--171612	46	11.5	46	80	7	543	35	5	13	45	1.68
171085--171552	114	4.1	115	83	5	587	34	6	13	45	1.70
171395--171427	17	1.9	17	93	0	57	21	9	21	48	1.77
171373--171451	40	2.0	39	95	2	140	29	7	16	46	1.74
171339--171495	85	1.8	85	84	2	217	32	6	15	45	1.71
171520--171586	33	2.0	33	97	0	125	41	2	10	44	1.54
171552--171612	23	2.7	23	86	0	86	39	1	11	47	1.50
171496--171608	56	2.0	56	91	0	181	39	3	9	46	1.54
171668--171771	36	2.9	36	78	5	120	30	12	20	36	1.90
173465--173533	21	3.2	20	71	24	52	33	4	0	62	1.15
173467--173548	25	3.2	25	77	8	69	35	4	0	59	1.19
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
177319--177485	84	2.0	85	94	4	293	29	21	17	30	1.97
182775--182817	17	2.5	17	80	0	50	55	13	11	18	1.68
201657--201767	35	3.2	35	75	7	118	28	20	20	29	1.98
204504--204536	17	1.9	17	93	0	57	51	9	12	27	1.69
205768--205974	104	2.0	103	96	0	378	26	29	15	28	1.96
207262--207307	24	1.9	24	82	8	58	45	15	10	28	1.79
207948--207978	12	2.6	12	94	0	53	0	35	0	64	0.94
217091--217125	18	1.9	18	94	0	61	17	20	20	42	1.89
217565--217614	21	2.4	20	77	9	55	18	14	24	44	1.86
231059--231109	14	3.7	14	80	14	54	68	0	31	0	0.90
231059--231118	21	2.8	21	76	14	61	68	0	30	1	0.99
237911--237971	29	2.1	30	87	3	88	45	11	6	36	1.66
246047--246086	21	1.9	21	94	0	71	57	7	5	30	1.48
254946--255029	26	3.2	26	75	6	89	25	22	22	29	1.99
259665--259818	55	2.8	55	85	0	218	27	25	20	25	1.99
262392--262450	23	2.6	23	94	0	100	37	22	15	25	1.93
262992--263248	41	6.2	41	84	5	288	26	22	10	40	1.86
265951--265996	21	2.2	21	88	7	67	28	2	47	21	1.62
266255--266297	17	2.4	18	81	18	54	62	4	30	2	1.28
268776--268831	21	2.7	21	88	2	78	33	10	26	28	1.90
272290--272335	22	2.1	22	84	8	58	67	6	0	26	1.15
273391--273424	14	2.4	14	85	0	50	44	26	11	17	1.83
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
277109--277216	31	3.5	31	71	14	98	25	17	12	44	1.83
277109--277224	60	1.9	60	89	0	178	25	16	12	45	1.83
277170--277270	49	2.1	49	83	7	125	22	20	11	44	1.84
277437--277571	31	4.4	31	69	16	93	43	12	17	25	1.85
279452--279484	9	3.6	9	95	4	57	9	3	0	87	0.63
279444--279484	18	2.2	19	86	4	57	7	2	4	85	0.81
285458--285510	29	1.9	26	85	11	70	43	5	3	47	1.45
292302--292333	10	3.2	10	100	0	64	28	9	31	31	1.88
304516--304573	29	2.0	29	86	3	80	56	13	8	20	1.63
307194--307254	28	2.2	29	77	19	67	9	8	14	67	1.42
309147--309186	15	2.6	15	88	4	53	25	2	0	72	0.97
312026--312124	39	2.5	39	90	0	162	25	6	16	52	1.66
312525--312558	10	3.3	10	87	4	50	20	38	8	32	1.84
315422--315505	11	7.7	11	67	19	52	71	0	23	4	1.05
315423--315490	21	3.3	21	75	6	68	72	0	22	5	1.06
315465--315519	15	3.9	15	75	20	55	69	0	27	3	1.05
315440--315517	27	2.9	28	83	10	85	69	0	26	3	1.06

Tables:   1

The End!