Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: NTFQ01000020.1 Kokia drynarioides strain JFW-HI SEQ_25124, whole genome shotgun sequence

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 961

Length: 1602
ACGTcount: A:0.35, C:0.10, G:0.15, T:0.39


Found at i:326 original size:24 final size:24

Alignment explanation


    Indices: 271--326  Score: 71
    Period size: 24  Copynumber: 2.3  Consensus size: 24

        261 AATTCTTATG

                                    
        271 ATTATTTATAATAAGAAATATAAT
          1 ATTATTTATAATAAGAAATATAAT

               *                      
        295 ATTTTTTATTAATAA-AAATATGAAT
          1 ATTATTTA-TAATAAGAAATAT-AAT

                    
        320 -TTATTTA
          1 ATTATTTA

        327 ATGCTTTGGT


Statistics
Matches: 28,  Mismatches: 2, Indels: 4
        0.82            0.06        0.12

Matches are distributed among these distances:
  24   19  0.68
  25    9  0.32

ACGTcount: A:0.48, C:0.00, G:0.04, T:0.48


Consensus pattern (24 bp):   
ATTATTTATAATAAGAAATATAAT
Done.