Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: NTFQ01002001.1 Kokia drynarioides strain JFW-HI SEQ_113861, whole genome shotgun sequence

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000

Length: 2185
ACGTcount: A:0.29, C:0.16, G:0.18, T:0.38


Found at i:152 original size:17 final size:17

Alignment explanation


    Indices: 113--163  Score: 52
    Period size: 17  Copynumber: 3.1  Consensus size: 17

        103 TATTTTTATT

                           * 
        113 TTAAAAT-TTTAAA-AA
          1 TTAAAATATTTAAATTA

                              
        128 TTATAAATATTTAAATTA
          1 TTA-AAATATTTAAATTA

                    * *      
        146 TTAAAATAATAAAATTA
          1 TTAAAATATTTAAATTA

             
        163 T
          1 T

        164 ATTTTAATAT


Statistics
Matches: 30,  Mismatches: 3, Indels: 4
        0.81            0.08        0.11

Matches are distributed among these distances:
  15    3  0.10
  16    4  0.13
  17   19  0.63
  18    4  0.13

ACGTcount: A:0.57, C:0.00, G:0.00, T:0.43


Consensus pattern (17 bp):   
TTAAAATATTTAAATTA

Found at i:274 original size:17 final size:17

Alignment explanation


    Indices: 252--284  Score: 66
    Period size: 17  Copynumber: 1.9  Consensus size: 17

        242 TCATGTGCTT

                             
        252 ACACCTTGGAGGACAAA
          1 ACACCTTGGAGGACAAA

                            
        269 ACACCTTGGAGGACAA
          1 ACACCTTGGAGGACAA

        285 GTTTCTGACT


Statistics
Matches: 16,  Mismatches: 0, Indels: 0
        1.00            0.00        0.00

Matches are distributed among these distances:
  17   16  1.00

ACGTcount: A:0.39, C:0.24, G:0.24, T:0.12


Consensus pattern (17 bp):   
ACACCTTGGAGGACAAA
Done.