Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: NTFQ01002003.1 Kokia drynarioides strain JFW-HI SEQ_113864, whole genome shotgun sequence

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000

Length: 7289
ACGTcount: A:0.34, C:0.18, G:0.16, T:0.32


Found at i:5810 original size:14 final size:15

Alignment explanation


    Indices: 5783--5821  Score: 60
    Period size: 15  Copynumber: 2.6  Consensus size: 15

       5773 AATATAATTT

                *          
       5783 TAAATTTAAAAAAAA
          1 TAAAGTTAAAAAAAA

              *            
       5798 TACAGTTAAAAAAAA
          1 TAAAGTTAAAAAAAA

                     
       5813 TAAAGTTAA
          1 TAAAGTTAA

       5822 CATATTATGG


Statistics
Matches: 21,  Mismatches: 3, Indels: 0
        0.88            0.12        0.00

Matches are distributed among these distances:
  15   21  1.00

ACGTcount: A:0.67, C:0.03, G:0.05, T:0.26


Consensus pattern (15 bp):   
TAAAGTTAAAAAAAA
Done.