Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: NTFQ01002006.1 Kokia drynarioides strain JFW-HI SEQ_113867, whole genome shotgun sequence

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000

Length: 2506
ACGTcount: A:0.34, C:0.19, G:0.14, T:0.32


Found at i:1261 original size:15 final size:15

Alignment explanation


    Indices: 1241--1276  Score: 54
    Period size: 15  Copynumber: 2.4  Consensus size: 15

       1231 GAACATTCAC

                      *  * 
       1241 AACTTCTGGATCATG
          1 AACTTCTGGAACAGG

                           
       1256 AACTTCTGGAACAGG
          1 AACTTCTGGAACAGG

                  
       1271 AACTTC
          1 AACTTC

       1277 AAGATTTTCC


Statistics
Matches: 19,  Mismatches: 2, Indels: 0
        0.90            0.10        0.00

Matches are distributed among these distances:
  15   19  1.00

ACGTcount: A:0.31, C:0.22, G:0.19, T:0.28


Consensus pattern (15 bp):   
AACTTCTGGAACAGG
Done.