Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: NTFQ01002009.1 Kokia drynarioides strain JFW-HI SEQ_113875, whole genome shotgun sequence

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000

Length: 1751
ACGTcount: A:0.31, C:0.16, G:0.17, T:0.37


Found at i:499 original size:50 final size:50

Alignment explanation


    Indices: 419--568  Score: 291
    Period size: 50  Copynumber: 3.0  Consensus size: 50

        409 TTCTATGTAC

                                     *                        
        419 TATAAATAGGGGATAGAGTGATATGTATTTCTCACTTCCAATTCTCTGAA
          1 TATAAATAGGGGATAGAGTGATATGAATTTCTCACTTCCAATTCTCTGAA

                                                              
        469 TATAAATAGGGGATAGAGTGATATGAATTTCTCACTTCCAATTCTCTGAA
          1 TATAAATAGGGGATAGAGTGATATGAATTTCTCACTTCCAATTCTCTGAA

                                                              
        519 TATAAATAGGGGATAGAGTGATATGAATTTCTCACTTCCAATTCTCTGAA
          1 TATAAATAGGGGATAGAGTGATATGAATTTCTCACTTCCAATTCTCTGAA

        569 AAATCCTCCA


Statistics
Matches: 99,  Mismatches: 1, Indels: 0
        0.99            0.01        0.00

Matches are distributed among these distances:
  50   99  1.00

ACGTcount: A:0.33, C:0.14, G:0.18, T:0.35


Consensus pattern (50 bp):   
TATAAATAGGGGATAGAGTGATATGAATTTCTCACTTCCAATTCTCTGAA
Done.