Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: NTFQ01002010.1 Kokia drynarioides strain JFW-HI SEQ_113876, whole genome shotgun sequence

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000

Length: 2215
ACGTcount: A:0.33, C:0.17, G:0.22, T:0.28


Found at i:1551 original size:15 final size:15

Alignment explanation


    Indices: 1533--1571  Score: 51
    Period size: 15  Copynumber: 2.6  Consensus size: 15

       1523 AAGAGAAGGA

                *          
       1533 TGAGGAAGAAGACGC
          1 TGAGAAAGAAGACGC

                        *  
       1548 TGAGAAAGAAGATGC
          1 TGAGAAAGAAGACGC

               *     
       1563 TGATAAAGA
          1 TGAGAAAGA

       1572 GTCTGCTGAG


Statistics
Matches: 21,  Mismatches: 3, Indels: 0
        0.88            0.12        0.00

Matches are distributed among these distances:
  15   21  1.00

ACGTcount: A:0.46, C:0.08, G:0.33, T:0.13


Consensus pattern (15 bp):   
TGAGAAAGAAGACGC
Done.