Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: NTFQ01002014.1 Kokia drynarioides strain JFW-HI SEQ_113882, whole genome shotgun sequence

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000

Length: 6599
ACGTcount: A:0.34, C:0.16, G:0.16, T:0.34


Found at i:4978 original size:15 final size:15

Alignment explanation


    Indices: 4958--5005  Score: 53
    Period size: 15  Copynumber: 3.2  Consensus size: 15

       4948 TTTAACTGTC

                           
       4958 ATTTTGGGTTCTGAA
          1 ATTTTGGGTTCTGAA

                        *  *
       4973 ATTTTGGGCTTCAG-C
          1 ATTTTGGG-TTCTGAA

                        *  
       4988 ATTTTGGGTTCTAAA
          1 ATTTTGGGTTCTGAA

               
       5003 ATT
          1 ATT

       5006 CGCATTTAAC


Statistics
Matches: 26,  Mismatches: 5, Indels: 4
        0.74            0.14        0.11

Matches are distributed among these distances:
  14    3  0.12
  15   19  0.73
  16    4  0.15

ACGTcount: A:0.21, C:0.10, G:0.23, T:0.46


Consensus pattern (15 bp):   
ATTTTGGGTTCTGAA

Found at i:5417 original size:13 final size:13

Alignment explanation


    Indices: 5397--5426  Score: 53
    Period size: 13  Copynumber: 2.4  Consensus size: 13

       5387 TTTATTTATA

                         
       5397 AAAT-CAAATAAT
          1 AAATACAAATAAT

                         
       5409 AAATACAAATAAT
          1 AAATACAAATAAT

                 
       5422 AAATA
          1 AAATA

       5427 TATAATTATT


Statistics
Matches: 17,  Mismatches: 0, Indels: 1
        0.94            0.00        0.06

Matches are distributed among these distances:
  12    4  0.24
  13   13  0.76

ACGTcount: A:0.70, C:0.07, G:0.00, T:0.23


Consensus pattern (13 bp):   
AAATACAAATAAT
Done.