Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: NTFQ01002018.1 Kokia drynarioides strain JFW-HI SEQ_113889, whole genome shotgun sequence

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000

Length: 2156
ACGTcount: A:0.32, C:0.14, G:0.19, T:0.35


Found at i:1345 original size:17 final size:17

Alignment explanation


    Indices: 1323--1361  Score: 53
    Period size: 17  Copynumber: 2.3  Consensus size: 17

       1313 CGGGGAAATA

                              
       1323 TGTTGTTGATGTAG-TTT
          1 TGTTGTTG-TGTAGCTTT

                       *     
       1340 TGTTGTTGTGTTGCTTT
          1 TGTTGTTGTGTAGCTTT

                 
       1357 TGTTG
          1 TGTTG

       1362 GGTTACTCTG


Statistics
Matches: 20,  Mismatches: 1, Indels: 2
        0.87            0.04        0.09

Matches are distributed among these distances:
  16    4  0.20
  17   16  0.80

ACGTcount: A:0.05, C:0.03, G:0.31, T:0.62


Consensus pattern (17 bp):   
TGTTGTTGTGTAGCTTT
Done.