Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: NTFQ01002030.1 Kokia drynarioides strain JFW-HI SEQ_113911, whole genome shotgun sequence

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000

Length: 11586
ACGTcount: A:0.35, C:0.19, G:0.15, T:0.31

Warning! 1 characters in sequence are not A, C, G, or T


Found at i:1588 original size:21 final size:21

Alignment explanation


    Indices: 1547--1587  Score: 59
    Period size: 20  Copynumber: 2.0  Consensus size: 21

       1537 AAAACAACTG

                                 
       1547 TTAAAAGACAAGTAAAAAAAA
          1 TTAAAAGACAAGTAAAAAAAA

                                  
       1568 TTAAAAG-CAA-TAAAAGAAAA
          1 TTAAAAGACAAGTAAAA-AAAA

       1588 ACCATCTCAC


Statistics
Matches: 19,  Mismatches: 0, Indels: 3
        0.86            0.00        0.14

Matches are distributed among these distances:
  19    5  0.26
  20    7  0.37
  21    7  0.37

ACGTcount: A:0.71, C:0.05, G:0.10, T:0.15


Consensus pattern (21 bp):   
TTAAAAGACAAGTAAAAAAAA

Found at i:8316 original size:26 final size:27

Alignment explanation


    Indices: 8267--8317  Score: 79
    Period size: 26  Copynumber: 1.9  Consensus size: 27

       8257 AACTAACGAG

                                       
       8267 GATACCAACTTTAAAAAAAAAAATTTT
          1 GATACCAACTTTAAAAAAAAAAATTTT

                                      
       8294 GATA-CAA-TTTATAAAAAAAAAATT
          1 GATACCAACTTTA-AAAAAAAAAATT

       8318 AAATATAAAA


Statistics
Matches: 23,  Mismatches: 0, Indels: 3
        0.88            0.00        0.12

Matches are distributed among these distances:
  25    4  0.17
  26   15  0.65
  27    4  0.17

ACGTcount: A:0.59, C:0.08, G:0.04, T:0.29


Consensus pattern (27 bp):   
GATACCAACTTTAAAAAAAAAAATTTT
Done.