genome.fa.s2041.2.7.7.80.10.50.1000.1.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: NTFQ01002041.1 Kokia drynarioides strain JFW-HI SEQ_113928, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  34285

Tables:   1   

This is table  1  of  1  ( 36 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
1844--1936	30	3.1	29	80	10	107	32	5	23	38	1.78
2032--2094	30	2.1	29	94	2	108	34	4	23	36	1.76
2578--2642	30	2.2	30	91	0	103	26	3	13	56	1.52
3885--3918	15	2.2	16	89	5	52	82	2	0	14	0.79
4567--4935	40	9.3	40	72	10	258	27	16	23	32	1.96
4567--4913	79	4.4	79	86	1	444	26	17	23	32	1.96
4981--5014	10	3.2	10	88	12	50	29	0	17	52	1.45
5020--5074	16	3.4	16	82	2	65	40	1	7	50	1.40
5764--5842	6	12.2	6	75	15	61	53	1	3	41	1.27
5766--5841	18	3.9	18	75	14	71	52	1	3	42	1.28
6685--6943	29	8.9	28	71	11	157	30	25	5	38	1.79
6683--7000	59	5.5	59	81	8	375	29	24	6	39	1.80
6695--7000	116	2.6	117	87	6	410	28	24	6	40	1.80
14067--14168	40	2.5	40	79	6	116	37	16	21	24	1.94
14102--14234	40	3.3	39	80	6	122	40	16	24	18	1.90
14135--14219	42	2.1	40	86	4	116	41	14	25	18	1.88
15978--16115	29	4.7	30	82	9	160	34	26	4	35	1.76
15984--16113	58	2.2	60	85	6	178	33	25	4	36	1.77
16341--16526	28	6.3	29	82	10	155	35	24	3	37	1.72
16370--16502	29	4.6	28	84	8	126	36	23	3	36	1.73
16334--16526	59	3.3	58	78	11	189	35	23	3	37	1.71
16619--16643	7	3.6	7	100	0	50	52	0	0	48	1.00
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
20586--20850	30	9.0	30	76	8	213	36	2	25	35	1.70
20586--20857	59	4.6	59	75	9	196	36	2	25	35	1.70
20609--20833	117	1.9	116	81	8	269	38	1	23	36	1.66
21937--21999	32	2.0	32	96	3	119	49	3	0	47	1.17
26127--26161	18	1.9	18	88	0	52	80	14	5	0	0.89
29412--29447	18	2.0	18	100	0	72	38	27	11	22	1.88
30656--30917	29	9.0	29	82	5	251	30	3	30	34	1.74
30648--30917	59	4.6	59	86	1	348	30	3	31	34	1.75
32664--32699	15	2.4	15	90	9	56	16	0	30	52	1.44
32745--32796	6	9.0	6	78	16	56	50	1	1	46	1.23
32755--32786	11	2.8	11	95	4	55	56	0	0	43	0.99
32758--32806	17	2.9	17	87	3	73	57	2	0	40	1.10
33868--33951	30	2.8	29	82	5	105	46	25	13	15	1.81
33883--33951	15	4.6	15	85	0	102	43	24	14	17	1.86

Tables:   1

The End!