Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: NTFQ01002043.1 Kokia drynarioides strain JFW-HI SEQ_113930, whole genome shotgun sequence

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000

Length: 24288
ACGTcount: A:0.34, C:0.17, G:0.16, T:0.32

Warning! 108 characters in sequence are not A, C, G, or T


Found at i:9017 original size:15 final size:15

Alignment explanation


    Indices: 8998--9039  Score: 50
    Period size: 15  Copynumber: 2.8  Consensus size: 15

       8988 TTTTATATTT

                            
       8998 TTTAATTTTTATATAA
          1 TTTAATTTTTA-ATAA

                  *        
       9014 -TTAATATTTAATAA
          1 TTTAATTTTTAATAA

                   *    
       9028 TTTAATTATTAA
          1 TTTAATTTTTAA

       9040 ATTTATCAAT


Statistics
Matches: 22,  Mismatches: 3, Indels: 3
        0.79            0.11        0.11

Matches are distributed among these distances:
  14    4  0.18
  15   18  0.82

ACGTcount: A:0.43, C:0.00, G:0.00, T:0.57


Consensus pattern (15 bp):   
TTTAATTTTTAATAA
Done.