Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: NTFQ01002045.1 Kokia drynarioides strain JFW-HI SEQ_113932, whole genome shotgun sequence

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 793

Length: 1322
ACGTcount: A:0.35, C:0.16, G:0.13, T:0.36


Found at i:716 original size:29 final size:29

Alignment explanation


    Indices: 683--743  Score: 113
    Period size: 29  Copynumber: 2.1  Consensus size: 29

        673 GGATTGTCGT

                               *         
        683 TAACATTTCAAACATAAGTGACTAAAATG
          1 TAACATTTCAAACATAAGTAACTAAAATG

                                         
        712 TAACATTTCAAACATAAGTAACTAAAATG
          1 TAACATTTCAAACATAAGTAACTAAAATG

               
        741 TAA
          1 TAA

        744 TCTGAGGTAA


Statistics
Matches: 31,  Mismatches: 1, Indels: 0
        0.97            0.03        0.00

Matches are distributed among these distances:
  29   31  1.00

ACGTcount: A:0.51, C:0.13, G:0.08, T:0.28


Consensus pattern (29 bp):   
TAACATTTCAAACATAAGTAACTAAAATG
Done.