Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: NTFQ01002046.1 Kokia drynarioides strain JFW-HI SEQ_113934, whole genome shotgun sequence

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000

Length: 6081
ACGTcount: A:0.36, C:0.17, G:0.16, T:0.31


Found at i:276 original size:19 final size:20

Alignment explanation


    Indices: 254--292  Score: 62
    Period size: 20  Copynumber: 2.0  Consensus size: 20

        244 TCAAAGATTG

                                
        254 ATATTTA-ATTTAAGTTCGA
          1 ATATTTATATTTAAGTTCGA

                    *           
        273 ATATTTATTTTTAAGTTCGA
          1 ATATTTATATTTAAGTTCGA

        293 GTTGATTATG


Statistics
Matches: 18,  Mismatches: 1, Indels: 1
        0.90            0.05        0.05

Matches are distributed among these distances:
  19    7  0.39
  20   11  0.61

ACGTcount: A:0.33, C:0.05, G:0.10, T:0.51


Consensus pattern (20 bp):   
ATATTTATATTTAAGTTCGA
Done.