Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: NTFQ01002063.1 Kokia drynarioides strain JFW-HI SEQ_113967, whole genome shotgun sequence

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000

Length: 3865
ACGTcount: A:0.32, C:0.17, G:0.18, T:0.33


Found at i:1063 original size:25 final size:26

Alignment explanation


    Indices: 1035--1120  Score: 68
    Period size: 28  Copynumber: 3.2  Consensus size: 26

       1025 AAGTTAATGT

                                      
       1035 AATATTTT-TATTTTCTTTATAAAAA
          1 AATATTTTATATTTTCTTTATAAAAA

                                     *  *
       1060 AATATTATTATACTTTTCTCTT-TACAAC
          1 AATATT-TTATA-TTTTCT-TTATAAAAA

                     * *         *      
       1088 AATATTTTTCTGTTTTCTTTACATAAAA
          1 AATA-TTTTATATTTTCTTTATA-AAAA

                 
       1116 AATAT
          1 AATAT

       1121 ATTCTTTACA


Statistics
Matches: 47,  Mismatches: 7, Indels: 12
        0.71            0.11        0.18

Matches are distributed among these distances:
  25    6  0.13
  26    4  0.09
  27   10  0.21
  28   23  0.49
  29    4  0.09

ACGTcount: A:0.36, C:0.10, G:0.01, T:0.52


Consensus pattern (26 bp):   
AATATTTTATATTTTCTTTATAAAAA
Done.