Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: NTFQ01000207.1 Kokia drynarioides strain JFW-HI SEQ_110902, whole genome shotgun sequence

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000

Length: 1888
ACGTcount: A:0.36, C:0.17, G:0.17, T:0.30


Found at i:127 original size:15 final size:13

Alignment explanation


    Indices: 103--141  Score: 51
    Period size: 16  Copynumber: 2.8  Consensus size: 13

         93 TGCATATGCA

                         
        103 TACATGCATTCAT
          1 TACATGCATTCAT

                            
        116 TAGCATTGCATTTCAT
          1 TA-CA-TGCA-TTCAT

                      
        132 TACATGCATT
          1 TACATGCATT

        142 AAATTTCAAA


Statistics
Matches: 23,  Mismatches: 0, Indels: 6
        0.79            0.00        0.21

Matches are distributed among these distances:
  13    4  0.17
  14    6  0.26
  15    6  0.26
  16    7  0.30

ACGTcount: A:0.28, C:0.21, G:0.10, T:0.41


Consensus pattern (13 bp):   
TACATGCATTCAT
Done.