Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: NTFQ01002071.1 Kokia drynarioides strain JFW-HI SEQ_113980, whole genome shotgun sequence

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000

Length: 2403
ACGTcount: A:0.32, C:0.18, G:0.16, T:0.33


Found at i:1662 original size:45 final size:45

Alignment explanation


    Indices: 1598--1690  Score: 186
    Period size: 45  Copynumber: 2.1  Consensus size: 45

       1588 GTCGAGCAAC

                                                         
       1598 ATCTAGAAATACTAGTATCGATTCCTGCATCCATTGGATCATCCA
          1 ATCTAGAAATACTAGTATCGATTCCTGCATCCATTGGATCATCCA

                                                         
       1643 ATCTAGAAATACTAGTATCGATTCCTGCATCCATTGGATCATCCA
          1 ATCTAGAAATACTAGTATCGATTCCTGCATCCATTGGATCATCCA

               
       1688 ATC
          1 ATC

       1691 AGCCAATCTT


Statistics
Matches: 48,  Mismatches: 0, Indels: 0
        1.00            0.00        0.00

Matches are distributed among these distances:
  45   48  1.00

ACGTcount: A:0.31, C:0.25, G:0.13, T:0.31


Consensus pattern (45 bp):   
ATCTAGAAATACTAGTATCGATTCCTGCATCCATTGGATCATCCA
Done.