Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: NTFQ01002080.1 Kokia drynarioides strain JFW-HI SEQ_113991, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 7058
ACGTcount: A:0.33, C:0.17, G:0.16, T:0.33
Found at i:1752 original size:81 final size:81
Alignment explanation
Indices: 1617--1778 Score: 324
Period size: 81 Copynumber: 2.0 Consensus size: 81
1607 TTTACCACTC
1617 TTTACTTACTCGAAGTTCTAATGTGACTTCCTTAGAGTTAAACAACGAACCTCGTAGTATCGTCT
1 TTTACTTACTCGAAGTTCTAATGTGACTTCCTTAGAGTTAAACAACGAACCTCGTAGTATCGTCT
1682 TCAAATATGATGTAAT
66 TCAAATATGATGTAAT
1698 TTTACTTACTCGAAGTTCTAATGTGACTTCCTTAGAGTTAAACAACGAACCTCGTAGTATCGTCT
1 TTTACTTACTCGAAGTTCTAATGTGACTTCCTTAGAGTTAAACAACGAACCTCGTAGTATCGTCT
1763 TCAAATATGATGTAAT
66 TCAAATATGATGTAAT
1779 GTAGGAATGA
Statistics
Matches: 81, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
81 81 1.00
ACGTcount: A:0.31, C:0.19, G:0.15, T:0.36
Consensus pattern (81 bp):
TTTACTTACTCGAAGTTCTAATGTGACTTCCTTAGAGTTAAACAACGAACCTCGTAGTATCGTCT
TCAAATATGATGTAAT
Found at i:6291 original size:22 final size:19
Alignment explanation
Indices: 6244--6278 Score: 56
Period size: 18 Copynumber: 1.9 Consensus size: 19
6234 AAGCTAAATA
6244 AATCTAAA-TAGAACTCTT
1 AATCTAAACTAGAACTCTT
6262 AAT-TAAACTAGAACTCT
1 AATCTAAACTAGAACTCT
6279 AACTAATCTA
Statistics
Matches: 16, Mismatches: 0, Indels: 2
0.89 0.00 0.11
Matches are distributed among these distances:
17 4 0.25
18 12 0.75
ACGTcount: A:0.46, C:0.17, G:0.06, T:0.31
Consensus pattern (19 bp):
AATCTAAACTAGAACTCTT
Done.