Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: NTFQ01002082.1 Kokia drynarioides strain JFW-HI SEQ_113994, whole genome shotgun sequence

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000

Length: 2017
ACGTcount: A:0.37, C:0.13, G:0.14, T:0.36


Found at i:1446 original size:27 final size:27

Alignment explanation


    Indices: 1409--1462  Score: 81
    Period size: 27  Copynumber: 2.0  Consensus size: 27

       1399 AAATTATGTA

                  *            *       
       1409 ATTAATTAAAAGGTATATCCTTTGATT
          1 ATTAATCAAAAGGTATATCATTTGATT

                        *              
       1436 ATTAATCAAAAGTTATATCATTTGATT
          1 ATTAATCAAAAGGTATATCATTTGATT

       1463 TTTTACAAAA


Statistics
Matches: 24,  Mismatches: 3, Indels: 0
        0.89            0.11        0.00

Matches are distributed among these distances:
  27   24  1.00

ACGTcount: A:0.39, C:0.07, G:0.09, T:0.44


Consensus pattern (27 bp):   
ATTAATCAAAAGGTATATCATTTGATT

Found at i:1478 original size:27 final size:27

Alignment explanation


    Indices: 1422--1479  Score: 64
    Period size: 27  Copynumber: 2.1  Consensus size: 27

       1412 AATTAAAAGG

                  *                  * 
       1422 TATATCCTTTGATTATTAATCAAAAGT
          1 TATATCATTTGATTATTAATCAAAAAT

                          *  *          
       1449 TATATCATTTGATTTTTTA-CAAAATAT
          1 TATATCATTTGATTATTAATCAAAA-AT

                
       1476 TATA
          1 TATA

       1480 ACTATTCAAG


Statistics
Matches: 26,  Mismatches: 4, Indels: 2
        0.81            0.12        0.06

Matches are distributed among these distances:
  26    5  0.19
  27   21  0.81

ACGTcount: A:0.38, C:0.09, G:0.05, T:0.48


Consensus pattern (27 bp):   
TATATCATTTGATTATTAATCAAAAAT
Done.