Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: NTFQ01002092.1 Kokia drynarioides strain JFW-HI SEQ_114009, whole genome shotgun sequence

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000

Length: 16741
ACGTcount: A:0.33, C:0.15, G:0.16, T:0.36


Found at i:1405 original size:31 final size:31

Alignment explanation


    Indices: 1370--1435  Score: 114
    Period size: 31  Copynumber: 2.1  Consensus size: 31

       1360 AACGGTCCAA

                                           
       1370 TGACTTAAATAAAAACTTTCAAATAGTTTAG
          1 TGACTTAAATAAAAACTTTCAAATAGTTTAG

                      *         *          
       1401 TGACTTAAATGAAAACTTTCGAATAGTTTAG
          1 TGACTTAAATAAAAACTTTCAAATAGTTTAG

                
       1432 TGAC
          1 TGAC

       1436 CATTTTGTAA


Statistics
Matches: 33,  Mismatches: 2, Indels: 0
        0.94            0.06        0.00

Matches are distributed among these distances:
  31   33  1.00

ACGTcount: A:0.41, C:0.11, G:0.14, T:0.35


Consensus pattern (31 bp):   
TGACTTAAATAAAAACTTTCAAATAGTTTAG

Found at i:9489 original size:15 final size:14

Alignment explanation


    Indices: 9465--9495  Score: 53
    Period size: 15  Copynumber: 2.1  Consensus size: 14

       9455 GAAGTAATTG

                          
       9465 GAAACAAAAAGAAA
          1 GAAACAAAAAGAAA

                           
       9479 GAAAGCAAAAAGAAA
          1 GAAA-CAAAAAGAAA

              
       9494 GA
          1 GA

       9496 GGTGGATAAC


Statistics
Matches: 16,  Mismatches: 0, Indels: 1
        0.94            0.00        0.06

Matches are distributed among these distances:
  14    4  0.25
  15   12  0.75

ACGTcount: A:0.74, C:0.06, G:0.19, T:0.00


Consensus pattern (14 bp):   
GAAACAAAAAGAAA
Done.