Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: NTFQ01002095.1 Kokia drynarioides strain JFW-HI SEQ_114013, whole genome shotgun sequence

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000

Length: 2089
ACGTcount: A:0.36, C:0.18, G:0.14, T:0.33


Found at i:743 original size:51 final size:51

Alignment explanation


    Indices: 667--770  Score: 208
    Period size: 51  Copynumber: 2.0  Consensus size: 51

        657 AAAGCTTAAG

                                                               
        667 AATGAAACCCTAGTTTTCCCCTTATGCTTGACGAAGAAGATGAAGAAATTA
          1 AATGAAACCCTAGTTTTCCCCTTATGCTTGACGAAGAAGATGAAGAAATTA

                                                               
        718 AATGAAACCCTAGTTTTCCCCTTATGCTTGACGAAGAAGATGAAGAAATTA
          1 AATGAAACCCTAGTTTTCCCCTTATGCTTGACGAAGAAGATGAAGAAATTA

              
        769 AA
          1 AA

        771 AGAAGAAAAA


Statistics
Matches: 53,  Mismatches: 0, Indels: 0
        1.00            0.00        0.00

Matches are distributed among these distances:
  51   53  1.00

ACGTcount: A:0.38, C:0.17, G:0.17, T:0.27


Consensus pattern (51 bp):   
AATGAAACCCTAGTTTTCCCCTTATGCTTGACGAAGAAGATGAAGAAATTA
Done.