Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: NTFQ01000210.1 Kokia drynarioides strain JFW-HI SEQ_110905, whole genome shotgun sequence

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000

Length: 8543
ACGTcount: A:0.33, C:0.16, G:0.16, T:0.35

Warning! 14 characters in sequence are not A, C, G, or T


Found at i:3060 original size:20 final size:20

Alignment explanation


    Indices: 3027--3065  Score: 60
    Period size: 20  Copynumber: 1.9  Consensus size: 20

       3017 TACTAAAATT

                 *   *          
       3027 ATATATTTTTAATATTTAAG
          1 ATATAATTTAAATATTTAAG

                               
       3047 ATATAATTTAAATATTTAA
          1 ATATAATTTAAATATTTAA

       3066 ATTAAATTTC


Statistics
Matches: 17,  Mismatches: 2, Indels: 0
        0.89            0.11        0.00

Matches are distributed among these distances:
  20   17  1.00

ACGTcount: A:0.46, C:0.00, G:0.03, T:0.51


Consensus pattern (20 bp):   
ATATAATTTAAATATTTAAG
Done.