Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: NTFQ01002100.1 Kokia drynarioides strain JFW-HI SEQ_114020, whole genome shotgun sequence

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 640

Length: 1067
ACGTcount: A:0.36, C:0.21, G:0.14, T:0.30


Found at i:646 original size:17 final size:16

Alignment explanation


    Indices: 616--650  Score: 52
    Period size: 17  Copynumber: 2.1  Consensus size: 16

        606 TATTTTTTGT

                            
        616 TTTAATTTACTTTAAA
          1 TTTAATTTACTTTAAA

                      *      
        632 TTTAAGTTTATTTTAAA
          1 TTTAA-TTTACTTTAAA

              
        649 TT
          1 TT

        651 AAAATTAAAT


Statistics
Matches: 17,  Mismatches: 1, Indels: 1
        0.89            0.05        0.05

Matches are distributed among these distances:
  16    5  0.29
  17   12  0.71

ACGTcount: A:0.34, C:0.03, G:0.03, T:0.60


Consensus pattern (16 bp):   
TTTAATTTACTTTAAA
Done.