Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: NTFQ01002101.1 Kokia drynarioides strain JFW-HI SEQ_114022, whole genome shotgun sequence

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000

Length: 2547
ACGTcount: A:0.23, C:0.23, G:0.19, T:0.35

Warning! 1 characters in sequence are not A, C, G, or T


Found at i:45 original size:18 final size:19

Alignment explanation


    Indices: 3--45  Score: 52
    Period size: 18  Copynumber: 2.3  Consensus size: 19

          1 TG

                               
          3 CTTTTCTCATCTCTCGCTT
          1 CTTTTCTCATCTCTCGCTT

             *            **   
         22 CCTTTCT-ATCTCTTTCTT
          1 CTTTTCTCATCTCTCGCTT

                  
         40 CTTTTC
          1 CTTTTC

         46 CTTCACATTT


Statistics
Matches: 20,  Mismatches: 4, Indels: 1
        0.80            0.16        0.04

Matches are distributed among these distances:
  18   14  0.70
  19    6  0.30

ACGTcount: A:0.05, C:0.35, G:0.02, T:0.58


Consensus pattern (19 bp):   
CTTTTCTCATCTCTCGCTT
Done.