Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: NTFQ01002102.1 Kokia drynarioides strain JFW-HI SEQ_114023, whole genome shotgun sequence

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000

Length: 1932
ACGTcount: A:0.35, C:0.17, G:0.25, T:0.23


Found at i:1752 original size:18 final size:19

Alignment explanation


    Indices: 1726--1768  Score: 52
    Period size: 18  Copynumber: 2.3  Consensus size: 19

       1716 AAATGTGAAG

                               
       1726 GAAAAGAAGAAAGAGAT-A
          1 GAAAAGAAGAAAGAGATGA

                *    **        
       1744 GAAAGGAAGCGAGAGATGA
          1 GAAAAGAAGAAAGAGATGA

                  
       1763 GAAAAG
          1 GAAAAG

       1769 CATGACTGGC


Statistics
Matches: 20,  Mismatches: 4, Indels: 1
        0.80            0.16        0.04

Matches are distributed among these distances:
  18   14  0.70
  19    6  0.30

ACGTcount: A:0.58, C:0.02, G:0.35, T:0.05


Consensus pattern (19 bp):   
GAAAAGAAGAAAGAGATGA
Done.