Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: NTFQ01002104.1 Kokia drynarioides strain JFW-HI SEQ_114025, whole genome shotgun sequence

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 659

Length: 1099
ACGTcount: A:0.39, C:0.12, G:0.08, T:0.41


Found at i:175 original size:28 final size:30

Alignment explanation


    Indices: 109--182  Score: 70
    Period size: 28  Copynumber: 2.6  Consensus size: 30

         99 ATTCTATTTG

                                           
        109 ATTATATTTTAATCATAATAAAAAGTAGATT
          1 ATTA-ATTTTAATCATAATAAAAAGTAGATT

                              * *     *   
        140 -TTAA-TTTAATCATAA-CATAA-TATATT
          1 ATTAATTTTAATCATAATAAAAAGTAGATT

                               
        166 ATTAATTTT-AT-ATAATA
          1 ATTAATTTTAATCATAATA

        183 TTATAATTTT


Statistics
Matches: 36,  Mismatches: 4, Indels: 10
        0.72            0.08        0.20

Matches are distributed among these distances:
  26    9  0.25
  27    9  0.25
  28   14  0.39
  29    1  0.03
  30    3  0.08

ACGTcount: A:0.47, C:0.04, G:0.03, T:0.46


Consensus pattern (30 bp):   
ATTAATTTTAATCATAATAAAAAGTAGATT
Done.