Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: NTFQ01000211.1 Kokia drynarioides strain JFW-HI SEQ_110906, whole genome shotgun sequence

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000

Length: 4447
ACGTcount: A:0.34, C:0.14, G:0.18, T:0.33


Found at i:1694 original size:26 final size:26

Alignment explanation


    Indices: 1642--1694  Score: 61
    Period size: 26  Copynumber: 2.0  Consensus size: 26

       1632 CTTTCTCTCA

                       *     ***      
       1642 GTTTCTCTCTTTTTTTTTGGTGGAAT
          1 GTTTCTCTCTTCTTTTTAAATGGAAT

                                  *   
       1668 GTTTCTCTCTTCTTTTTAAATGTAAT
          1 GTTTCTCTCTTCTTTTTAAATGGAAT

             
       1694 G
          1 G

       1695 AAAAGCAAAA


Statistics
Matches: 22,  Mismatches: 5, Indels: 0
        0.81            0.19        0.00

Matches are distributed among these distances:
  26   22  1.00

ACGTcount: A:0.13, C:0.13, G:0.15, T:0.58


Consensus pattern (26 bp):   
GTTTCTCTCTTCTTTTTAAATGGAAT
Done.