Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: NTFQ01002116.1 Kokia drynarioides strain JFW-HI SEQ_114041, whole genome shotgun sequence

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000

Length: 2076
ACGTcount: A:0.38, C:0.13, G:0.13, T:0.36


Found at i:1771 original size:16 final size:16

Alignment explanation


    Indices: 1750--1785  Score: 72
    Period size: 16  Copynumber: 2.2  Consensus size: 16

       1740 CAATTTTGAG

                            
       1750 CCTTTAAAGGTGTTAT
          1 CCTTTAAAGGTGTTAT

                            
       1766 CCTTTAAAGGTGTTAT
          1 CCTTTAAAGGTGTTAT

                
       1782 CCTT
          1 CCTT

       1786 CCTTATGTGT


Statistics
Matches: 20,  Mismatches: 0, Indels: 0
        1.00            0.00        0.00

Matches are distributed among these distances:
  16   20  1.00

ACGTcount: A:0.22, C:0.17, G:0.17, T:0.44


Consensus pattern (16 bp):   
CCTTTAAAGGTGTTAT
Done.